6.58 programming project 2: Manipulate DNA
Part A:
Given: A DNA string, s, where the alphabe...
Computers and Technology, 03.02.2022 14:00 parkermacyow71bm
6.58 programming project 2: Manipulate DNA
Part A:
Given: A DNA string, s, where the alphabet of DNA is from the set {'A','C','G','T'}
Return: Four integers (separated by spaces) counting the respective number of times that the symbols 'A', 'C', 'G', and 'T' occur in s. On the next line, a float with the CG% (which is the combined percentages of Cs and Gs in the string). The percentage is from 0 to 100 and NOT a fractional percentage.
Sample Input:
Sample Output: 25 8 16 21
34.3
Part B:
Given two strings s and t of equal length, the Hamming distance between s and t, denoted
, is the number of corresponding symbols that differ in s and t.
Given: Two DNA strings s and t of equal length .
Return: The Hamming distance $d_H(s, t)$.
1st Sample Input:
GATATCGTCTGGGACCT
CATCGCATTTACGGCCT
Sample Output:
8
2nd Sample Input:
GATATCGTCTGGGACCT
CCATCGCATTTACGGCCT
Sample Output:
Error: Sequences Length Mismatch
You need to write a function for each part.
The declarations for both functions are given in the template.
You may use more functions if you find that helpful for your implementation, but only these two will be explicitly checked.
def countBases(seq):
# return count of As, count of Cs, count of Gs, count of Ts, and Percentage of Cs and Gs combined (with 3 significant digits)
return '{:d} {:d} {:d} {:d}\n{:2.1f}'.format(A, C, G, T, cg_percentage)
def hammingdistance(seq_a, seq_b):
#return the number of differences between the two sequences
#If the sequences are not the same length, return "Error: Sequences Length Mismatch"
if __name__=="__main__":
# optional - add any test code here inside this block. we do this so that when the zyBooks tests includes
# your files to call your functions directly that the testing code in this block is not invoked
#basecount=countBases( )
pass
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